BAM

FastQPress allows both reference-free and reference-based compression.

Reference-free compression

fastqpress --compress -rf my_file.bam

Reference-based compression

fastqpress --compress -rb my_file.bam 

Multiple files compression

fastqpress --compress -m my_file1.bam my_file2.bam my_file3.bam

Decompression

fastqpress --decompress my_file.bam.fqpress